Can the propensity of protein crystallization be increased by using systematic screening with metals?

Hegde, Raghuram and Pavitra, G C and Dey, Debayan and Almo, Steven C Almo and Ramakumar, S and Ramgopal, Udupi A (2017) Can the propensity of protein crystallization be increased by using systematic screening with metals? Protein Science, 26. pp. 1704-1713. ISSN 1469-896X

[img] PDF
scan0027.pdf - Published Version
Restricted to Registered users only

Download (8MB) | Request a copy
Official URL: https://onlinelibrary.wiley.com/journal/1469896x

Abstract

Protein crystallization is one of the major bottlenecks in protein structure elucidation with new strategies being constantly developed to improve the chances of crystallization. Generally, wellordered epitopes possessing complementary surface and capable of producing stable inter-protein interactions generate a regular three-dimensional arrangement of protein molecules which eventually results in a crystal lattice. Metals, when used for crystallization, with their various coordination numbers and geometries, can generate such epitopes mediating protein oligomerization and/or establish crystal contacts. Some examples of metal-mediated oligomerization and crystallization together with our experience on metal-mediated crystallization of a putative rRNA methyltransferase from Sinorhizobium meliloti are presented. Analysis of crystal structures from protein data bank (POB) using a non-redundant data set with a 90% identity cutoff, reveals that around 67% of proteins contain at least one metal ion, with -14% containing combination of metal ions. Interestingly, metal containing conditions in most commercially available and popular crystallization kits generally contain only a single metal ion, with combinations of metals only in a very few conditions. Based on the results presented in this review, it appears that the crystallization screens need expansion with systematic screening of metal ions that could be crucial for stabilizing the protein structure or for establishing crystal contact and thereby aiding protein crystallization.

Item Type: Article
Uncontrolled Keywords: protein crystallization; metals in crystallization; combination of metals in crystallization; crystallization screens
Subjects: Research > Research Center - Technical
Depositing User: MIT Library
Date Deposited: 29 Mar 2019 10:10
Last Modified: 29 Mar 2019 10:10
URI: http://eprints.manipal.edu/id/eprint/153553

Actions (login required)

View Item View Item